# biology/atac-seq - The NetBSD Packages Collection

Core tools needed for ATAC-Seq analysis

    The atac-seq meta-package provides the core tools needed for
    performing a typical ATAC-Seq differential accessibility analysis,
    including adapter trimming, quality control, alignment, peak calling,
    and identification of differentially accessible peaks.  Researchers
    may want additional tools for data manipulation, gene ontology,
    etc.

- Source version: `atac-seq-1.5.0`
- Maintainer: bacon AT NetBSD.org
- Website: none stated
- License: none stated
- Package history: cvs, hg, git

## Build dependencies

pkgtools/mktools pkgtools/cwrappers

## Runtime dependencies

biology/sra-tools biology/fastq-trim biology/fastqc biology/biolibc-tools biology/gffread biology/bwa biology/bowtie2 biology/samtools biology/igv biology/py-macs2 biology/py-macs3 biology/fasda biology/peak-classifier www/webbrowser www/curl archivers/lz4 archivers/xz archivers/zstd lang/python313 lang/python313

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | x86_64 | atac-seq-1.5.0.tgz
NetBSD 10.0 | x86_64 | atac-seq-1.5.0.tgz
NetBSD 11.0 | x86_64 | atac-seq-1.5.0.tgz
NetBSD 11.0 | x86_64 | atac-seq-1.5.0.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.